Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 LINC01230-201ENST00000625222 3017 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
SDCBPO00560 AC004987.2-201ENST00000395959 1148 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 BX842568.4-201ENST00000421222 227 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.22□□□□□ -0.29
SDCBPO00560 AL139010.1-201ENST00000454878 894 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 MIR4469-201ENST00000583919 79 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.22□□□□□ -0.29
SDCBPO00560 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 AC022145.2-201ENST00000598203 171 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 AL450472.2-201ENST00000603663 1156 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 AC105339.1-204ENST00000636249 355 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.22□□□□□ -0.29
SDCBPO00560 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.22□□□□□ -0.29
SDCBPO00560 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SDCBPO00560 AL136982.4-201ENST00000437689 1740 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.22□□□□□ -0.29
SDCBPO00560 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SDCBPO00560 PTENP1-202ENST00000532280 3996 ntBASIC13.22□□□□□ -0.29
SDCBPO00560 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 AP3S2-216ENST00000617003 1561 ntBASIC13.21□□□□□ -0.29
SDCBPO00560 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 KRT18P32-201ENST00000424695 1287 ntBASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms