Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 RPSAP31-201ENST00000416648 895 ntBASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SHROOM4Q9ULL8 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 CEP164P1-201ENST00000455142 418 ntBASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 AC073413.1-201ENST00000603927 732 ntBASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 AC092850.2-201ENST00000623821 2697 ntBASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC28.98■■■□□ 2.23
SHROOM4Q9ULL8 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 RN7SL713P-201ENST00000582127 302 ntBASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 HYMAI-201ENST00000635591 3347 ntBASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AL596276.2-201ENST00000447525 331 ntBASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC116345.2-201ENST00000512837 523 ntBASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 AL353770.1-201ENST00000614915 403 ntBASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC28.97■■■□□ 2.23
SHROOM4Q9ULL8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 AC103988.2-201ENST00000561804 725 ntBASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 PPY2P-201ENST00000582808 702 ntBASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 AC073352.2-201ENST00000609385 439 ntBASIC28.96■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms