Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MIR943-201ENST00000401286 94 ntBASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 CICP23-201ENST00000605013 2741 ntBASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AC241585.1-201ENST00000433527 519 ntBASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AC011467.4-201ENST00000594891 528 ntBASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 KRT18P28-201ENST00000453838 1332 ntBASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 AJ011931.1-201ENST00000618749 2492 ntBASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS29Q9UBQ0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
VPS29Q9UBQ0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 FGD5P1-202ENST00000614866 2498 ntBASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 AC139530.3-201ENST00000620344 690 ntBASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS29Q9UBQ0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms