Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 GNAQP1-201ENST00000444815 1067 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 RN7SL399P-201ENST00000471648 279 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 DOC2GP-202ENST00000514950 1163 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AC107373.2-201ENST00000607735 490 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AC140479.7-201ENST00000636301 2332 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AC007191.1-201ENST00000623179 2995 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 SPDYE19P-201ENST00000338590 713 ntBASIC16.52■□□□□ 0.24
SIX2Q9NPC8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 BASP1P1-201ENST00000430708 665 ntBASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AL353779.1-201ENST00000434793 351 ntBASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AC004066.1-201ENST00000502488 802 ntBASIC16.52■□□□□ 0.24
SIX2Q9NPC8 TPRX2P-201ENST00000535362 881 ntBASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.52■□□□□ 0.24
SIX2Q9NPC8 AC018529.2-202ENST00000611482 3087 ntBASIC16.52■□□□□ 0.23
SIX2Q9NPC8 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 MTHFR-210ENST00000641407 2387 ntBASIC16.52■□□□□ 0.23
SIX2Q9NPC8 AC068418.2-201ENST00000577309 3703 ntBASIC16.52■□□□□ 0.23
SIX2Q9NPC8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.52■□□□□ 0.23
SIX2Q9NPC8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AL512638.1-201ENST00000457493 794 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 CYMP-203ENST00000474680 1263 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AC036164.1-201ENST00000570544 333 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AL049840.4-201ENST00000602422 811 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 MIR8072-201ENST00000614241 80 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AC005912.2-201ENST00000619492 2400 ntBASIC16.51■□□□□ 0.23
SIX2Q9NPC8 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms