Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 NF1P11-201ENST00000621292 1282 ntBASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC006328.1-201ENST00000437571 379 ntBASIC15.25■□□□□ 0.03
TTC28Q96AY4 SCARNA12-201ENST00000459155 270 ntBASIC15.25■□□□□ 0.03
TTC28Q96AY4 TMA16-204ENST00000508268 608 ntTSL 2 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 KNOP1P1-201ENST00000542108 989 ntBASIC15.25■□□□□ 0.03
TTC28Q96AY4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.25■□□□□ 0.03
TTC28Q96AY4 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TTC28Q96AY4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 TPT1P6-201ENST00000458298 514 ntBASIC15.24■□□□□ 0.03
TTC28Q96AY4 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.24■□□□□ 0.03
TTC28Q96AY4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 AC004408.2-201ENST00000623613 2777 ntBASIC15.24■□□□□ 0.03
TTC28Q96AY4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TTC28Q96AY4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.24■□□□□ 0.03
TTC28Q96AY4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC026412.1-206ENST00000502273 206 ntBASIC15.23■□□□□ 0.03
TTC28Q96AY4 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC078814.4-201ENST00000546650 327 ntBASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 155.5 ms