Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 ELK2AP-201ENST00000392510 1007 ntBASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 AC084364.1-201ENST00000551967 1556 ntBASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AL662890.1-201ENST00000396818 632 ntBASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NPAS3Q8IXF0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 LINC02199-201ENST00000506655 2702 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 POM121L8P-201ENST00000417732 1281 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 POM121L9P-203ENST00000441984 1285 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 AC105129.2-201ENST00000559536 390 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 RN7SL713P-201ENST00000582127 302 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 NDUFV2P1-201ENST00000596415 907 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 OR10B1P-201ENST00000601666 907 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 AC073413.1-201ENST00000603927 732 ntBASIC15.88■□□□□ 0.13
NPAS3Q8IXF0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms