Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AC023824.1-201ENST00000562945 2975 ntBASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AL133267.1-201ENST00000398220 340 ntBASIC18.67■□□□□ 0.58
VPS53Q5VIR6 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AC055876.2-201ENST00000531834 546 ntBASIC18.67■□□□□ 0.58
VPS53Q5VIR6 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS53Q5VIR6 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.66■□□□□ 0.58
VPS53Q5VIR6 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 CRB3P1-201ENST00000449338 276 ntBASIC18.66■□□□□ 0.58
VPS53Q5VIR6 SPDYE22P-201ENST00000582158 798 ntBASIC18.66■□□□□ 0.58
VPS53Q5VIR6 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 LINC02084-201ENST00000606069 1096 ntBASIC18.66■□□□□ 0.58
VPS53Q5VIR6 AL662799.1-202ENST00000614205 422 ntBASIC18.66■□□□□ 0.58
VPS53Q5VIR6 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS53Q5VIR6 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC091951.1-201ENST00000512854 2465 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 FAM86LP-201ENST00000478302 853 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC008494.3-201ENST00000606615 944 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC099568.2-201ENST00000609194 695 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AC007431.3-201ENST00000623221 587 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 TSPY26P-202ENST00000565928 3884 ntBASIC18.65■□□□□ 0.58
VPS53Q5VIR6 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms