Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 HYMAI-201ENST00000635591 3347 ntBASIC14.31□□□□□ -0.12
RNF4P78317 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RNF4P78317 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.31□□□□□ -0.12
RNF4P78317 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.31□□□□□ -0.12
RNF4P78317 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.31□□□□□ -0.12
RNF4P78317 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.31□□□□□ -0.12
RNF4P78317 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 AC136621.1-201ENST00000624017 2304 ntBASIC14.31□□□□□ -0.12
RNF4P78317 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RNF4P78317 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.31□□□□□ -0.12
RNF4P78317 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RNF4P78317 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNF4P78317 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.3□□□□□ -0.12
RNF4P78317 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 SSR4P1-203ENST00000599569 2260 ntBASIC14.3□□□□□ -0.12
RNF4P78317 TMBIM7P-203ENST00000641617 1718 ntBASIC14.3□□□□□ -0.12
RNF4P78317 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
RNF4P78317 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 AC105917.1-201ENST00000506637 2539 ntBASIC14.3□□□□□ -0.12
RNF4P78317 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RNF4P78317 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.3□□□□□ -0.12
RNF4P78317 ACTG1P3-201ENST00000431775 1114 ntBASIC14.3□□□□□ -0.12
RNF4P78317 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 AP001582.1-201ENST00000525856 295 ntBASIC14.3□□□□□ -0.12
RNF4P78317 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.3□□□□□ -0.12
RNF4P78317 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.3□□□□□ -0.12
RNF4P78317 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 CLUHP6-201ENST00000580789 941 ntBASIC14.3□□□□□ -0.12
RNF4P78317 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.3□□□□□ -0.12
RNF4P78317 RPSAP52-203ENST00000622976 1023 ntBASIC14.3□□□□□ -0.12
RNF4P78317 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms