Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
COL4A4P53420 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL4A4P53420 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 AC136621.1-201ENST00000624017 2304 ntBASIC16.14■□□□□ 0.17
COL4A4P53420 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A4P53420 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 AC126365.1-201ENST00000578585 1514 ntBASIC16.14■□□□□ 0.17
COL4A4P53420 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL4A4P53420 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.14■□□□□ 0.17
COL4A4P53420 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.14■□□□□ 0.17
COL4A4P53420 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.14■□□□□ 0.17
COL4A4P53420 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.14■□□□□ 0.17
COL4A4P53420 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 AC005324.6-201ENST00000587972 613 ntBASIC16.14■□□□□ 0.17
COL4A4P53420 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.14■□□□□ 0.17
COL4A4P53420 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
COL4A4P53420 AL136295.7-201ENST00000619226 1200 ntBASIC16.14■□□□□ 0.17
COL4A4P53420 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A4P53420 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL4A4P53420 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL4A4P53420 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A4P53420 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL4A4P53420 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
COL4A4P53420 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 AL645937.2-201ENST00000396808 931 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
COL4A4P53420 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.13■□□□□ 0.17
COL4A4P53420 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
COL4A4P53420 RPL17P45-201ENST00000586289 509 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 AC138894.2-201ENST00000602838 371 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 AC006453.1-201ENST00000636037 1257 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 C18orf15-201ENST00000623680 2534 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 TBC1D3J-201ENST00000620719 1426 ntBASIC16.13■□□□□ 0.17
COL4A4P53420 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A4P53420 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
COL4A4P53420 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A4P53420 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A4P53420 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A4P53420 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
COL4A4P53420 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A4P53420 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 AC026316.1-201ENST00000398900 414 ntBASIC16.12■□□□□ 0.17
COL4A4P53420 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.12■□□□□ 0.17
COL4A4P53420 AC006335.1-201ENST00000445200 547 ntBASIC16.12■□□□□ 0.17
COL4A4P53420 RN7SL67P-201ENST00000492147 296 ntBASIC16.12■□□□□ 0.17
COL4A4P53420 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A4P53420 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.12■□□□□ 0.17
COL4A4P53420 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.12■□□□□ 0.17
COL4A4P53420 SAMD11P1-201ENST00000571429 661 ntBASIC16.12■□□□□ 0.17
COL4A4P53420 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A4P53420 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A4P53420 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A4P53420 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A4P53420 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A4P53420 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A4P53420 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms