Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CTCFP49711 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.79■□□□□ 0.44
CTCFP49711 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC17.79■□□□□ 0.44
CTCFP49711 NAGK-204ENST00000443872 878 ntTSL 3 BASIC17.79■□□□□ 0.44
CTCFP49711 PUDPP3-201ENST00000445368 636 ntBASIC17.79■□□□□ 0.44
CTCFP49711 AC114812.1-204ENST00000449669 728 ntBASIC17.79■□□□□ 0.44
CTCFP49711 AC073150.1-201ENST00000450406 1084 ntBASIC17.79■□□□□ 0.44
CTCFP49711 AC024293.1-201ENST00000467930 498 ntBASIC17.79■□□□□ 0.44
CTCFP49711 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC17.79■□□□□ 0.44
CTCFP49711 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 AC007881.3-201ENST00000608897 607 ntBASIC17.79■□□□□ 0.44
CTCFP49711 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.79■□□□□ 0.44
CTCFP49711 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
CTCFP49711 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.79■□□□□ 0.44
CTCFP49711 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CTCFP49711 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
CTCFP49711 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.78■□□□□ 0.44
CTCFP49711 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.78■□□□□ 0.44
CTCFP49711 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 POM121L8P-201ENST00000417732 1281 ntBASIC17.78■□□□□ 0.44
CTCFP49711 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC17.78■□□□□ 0.44
CTCFP49711 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC17.78■□□□□ 0.44
CTCFP49711 POM121L9P-203ENST00000441984 1285 ntBASIC17.78■□□□□ 0.44
CTCFP49711 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.78■□□□□ 0.44
CTCFP49711 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 AP003398.1-201ENST00000531124 318 ntBASIC17.78■□□□□ 0.44
CTCFP49711 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.78■□□□□ 0.44
CTCFP49711 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.78■□□□□ 0.44
CTCFP49711 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CTCFP49711 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.78■□□□□ 0.44
CTCFP49711 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTCFP49711 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms