Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 AL645937.2-201ENST00000396808 931 ntBASIC16.04■□□□□ 0.16
PTPN9P43378 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 MYCLP2-201ENST00000449268 967 ntBASIC16.04■□□□□ 0.16
PTPN9P43378 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 AC140912.1-201ENST00000577171 1054 ntBASIC16.04■□□□□ 0.16
PTPN9P43378 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 AC007431.3-201ENST00000623221 587 ntBASIC16.04■□□□□ 0.16
PTPN9P43378 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 AL136379.1-201ENST00000623471 2642 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 REXO1L2P-201ENST00000425429 2069 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PTPN9P43378 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.03■□□□□ 0.16
PTPN9P43378 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 ELK1P1-201ENST00000485699 580 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.03■□□□□ 0.16
PTPN9P43378 AC190387.1-201ENST00000551683 408 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.03■□□□□ 0.16
PTPN9P43378 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.03■□□□□ 0.16
PTPN9P43378 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.03■□□□□ 0.16
PTPN9P43378 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 DBET-201ENST00000630918 3363 ntBASIC16.03■□□□□ 0.16
PTPN9P43378 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PTPN9P43378 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN9P43378 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN9P43378 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN9P43378 KRT8P22-201ENST00000562317 1415 ntBASIC16.02■□□□□ 0.16
PTPN9P43378 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.02■□□□□ 0.16
PTPN9P43378 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.02■□□□□ 0.16
PTPN9P43378 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PTPN9P43378 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.02■□□□□ 0.16
PTPN9P43378 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.02■□□□□ 0.16
PTPN9P43378 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.02■□□□□ 0.16
PTPN9P43378 C1QBPP1-201ENST00000400117 770 ntBASIC16.02■□□□□ 0.16
PTPN9P43378 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms