Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CIITAP33076 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 ACA64.2-201ENST00000459014 129 ntBASIC17.32■□□□□ 0.36
CIITAP33076 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CIITAP33076 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CIITAP33076 AL512343.1-201ENST00000605837 169 ntBASIC17.32■□□□□ 0.36
CIITAP33076 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
CIITAP33076 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 AL162727.3-201ENST00000635661 2787 ntBASIC17.32■□□□□ 0.36
CIITAP33076 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 AC092384.3-202ENST00000564646 2873 ntBASIC17.31■□□□□ 0.36
CIITAP33076 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 AC138035.3-201ENST00000622706 2791 ntBASIC17.31■□□□□ 0.36
CIITAP33076 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.31■□□□□ 0.36
CIITAP33076 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.31■□□□□ 0.36
CIITAP33076 GPR53P-205ENST00000457298 1084 ntBASIC17.31■□□□□ 0.36
CIITAP33076 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 RAB43P1-201ENST00000561790 589 ntBASIC17.31■□□□□ 0.36
CIITAP33076 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.31■□□□□ 0.36
CIITAP33076 DUX4L47-201ENST00000566374 394 ntBASIC17.31■□□□□ 0.36
CIITAP33076 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.31■□□□□ 0.36
CIITAP33076 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 AC145423.3-201ENST00000615987 467 ntBASIC17.31■□□□□ 0.36
CIITAP33076 AL603764.1-201ENST00000636452 321 ntBASIC17.31■□□□□ 0.36
CIITAP33076 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.31■□□□□ 0.36
CIITAP33076 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 AC073347.1-201ENST00000421633 2643 ntBASIC17.31■□□□□ 0.36
CIITAP33076 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.31■□□□□ 0.36
CIITAP33076 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CIITAP33076 MST1L-201ENST00000442552 2185 ntBASIC17.3■□□□□ 0.36
CIITAP33076 AP000845.1-201ENST00000581677 2131 ntBASIC17.3■□□□□ 0.36
CIITAP33076 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 OR8S1-201ENST00000310194 1080 ntBASIC17.3■□□□□ 0.36
CIITAP33076 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 BOLA2P3-201ENST00000404566 256 ntBASIC17.3■□□□□ 0.36
CIITAP33076 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CIITAP33076 ARSEP1-201ENST00000420443 635 ntBASIC17.3■□□□□ 0.36
CIITAP33076 KRT43P-201ENST00000434019 910 ntBASIC17.3■□□□□ 0.36
CIITAP33076 EIF3FP3-201ENST00000434851 1086 ntBASIC17.3■□□□□ 0.36
CIITAP33076 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms