Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC140479.7-201ENST00000636301 2332 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.63■□□□□ 0.09
PTPN4P29074 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 AC006504.5-208ENST00000588784 2401 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN4P29074 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN4P29074 AL512638.1-201ENST00000457493 794 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 AC105233.2-201ENST00000523697 349 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 AF228730.5-201ENST00000530288 346 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 MIR4453-201ENST00000584019 89 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.62■□□□□ 0.09
PTPN4P29074 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN4P29074 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 AC117489.1-201ENST00000625169 3217 ntBASIC15.62■□□□□ 0.09
PTPN4P29074 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PTPN4P29074 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN4P29074 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 AC009090.5-201ENST00000624886 2285 ntBASIC15.61■□□□□ 0.09
PTPN4P29074 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PTPN4P29074 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN4P29074 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 TERF1P3-201ENST00000505638 1227 ntBASIC15.61■□□□□ 0.09
PTPN4P29074 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN4P29074 AC097493.3-201ENST00000509725 367 ntBASIC15.61■□□□□ 0.09
PTPN4P29074 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN4P29074 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN4P29074 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN4P29074 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN4P29074 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PTPN4P29074 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms