Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.31□□□□□ -0.28
CD40P25942 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.31□□□□□ -0.28
CD40P25942 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CD40P25942 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.31□□□□□ -0.28
CD40P25942 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD40P25942 AC009090.5-201ENST00000624886 2285 ntBASIC13.3□□□□□ -0.28
CD40P25942 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.3□□□□□ -0.28
CD40P25942 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.3□□□□□ -0.28
CD40P25942 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.3□□□□□ -0.28
CD40P25942 AP000812.2-201ENST00000538934 718 ntBASIC13.3□□□□□ -0.28
CD40P25942 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
CD40P25942 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.3□□□□□ -0.28
CD40P25942 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 AC093525.8-201ENST00000624099 1342 ntBASIC13.3□□□□□ -0.28
CD40P25942 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
CD40P25942 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CD40P25942 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD40P25942 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
CD40P25942 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 AC007787.1-201ENST00000588095 1583 ntBASIC13.29□□□□□ -0.28
CD40P25942 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
CD40P25942 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.29□□□□□ -0.28
CD40P25942 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.29□□□□□ -0.28
CD40P25942 RNU1-114P-201ENST00000365297 166 ntBASIC13.29□□□□□ -0.28
CD40P25942 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CD40P25942 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 AL645937.2-201ENST00000396808 931 ntBASIC13.29□□□□□ -0.28
CD40P25942 KLF2P2-201ENST00000416807 1039 ntBASIC13.29□□□□□ -0.28
CD40P25942 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD40P25942 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.29□□□□□ -0.28
CD40P25942 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CD40P25942 GNRHR2-203ENST00000581100 1187 ntBASIC13.29□□□□□ -0.28
CD40P25942 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms