Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TPM1P09493 CICP14-201ENST00000629111 2732 ntBASIC17.12■□□□□ 0.33
TPM1P09493 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM1P09493 FAM86C2P-203ENST00000528684 1004 ntBASIC17.12■□□□□ 0.33
TPM1P09493 AL135744.1-201ENST00000565098 629 ntBASIC17.12■□□□□ 0.33
TPM1P09493 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 PEG13-201ENST00000631594 5667 ntBASIC17.12■□□□□ 0.33
TPM1P09493 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM1P09493 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TPM1P09493 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
TPM1P09493 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.11■□□□□ 0.33
TPM1P09493 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 AC005840.4-201ENST00000541242 2494 ntBASIC17.11■□□□□ 0.33
TPM1P09493 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 AC142381.1-201ENST00000426099 345 ntBASIC17.11■□□□□ 0.33
TPM1P09493 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 RN7SL589P-201ENST00000481268 310 ntBASIC17.11■□□□□ 0.33
TPM1P09493 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM1P09493 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.11■□□□□ 0.33
TPM1P09493 HNRNPUP1-201ENST00000554987 333 ntBASIC17.11■□□□□ 0.33
TPM1P09493 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM1P09493 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 AC041040.2-201ENST00000622926 2899 ntBASIC17.11■□□□□ 0.33
TPM1P09493 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM1P09493 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
TPM1P09493 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 AC104109.2-201ENST00000602919 1418 ntBASIC17.11■□□□□ 0.33
TPM1P09493 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TPM1P09493 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TPM1P09493 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TFAMP1-201ENST00000412727 736 ntBASIC17.1■□□□□ 0.33
TPM1P09493 AL671277.1-201ENST00000429656 993 ntBASIC17.1■□□□□ 0.33
TPM1P09493 AC007967.2-201ENST00000432613 625 ntBASIC17.1■□□□□ 0.33
TPM1P09493 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.1■□□□□ 0.33
TPM1P09493 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms