Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.24■□□□□ 0.19
APOEP02649 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 AL109954.1-202ENST00000564051 2148 ntBASIC16.24■□□□□ 0.19
APOEP02649 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
APOEP02649 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 TNRC18P2-201ENST00000417666 2714 ntBASIC16.24■□□□□ 0.19
APOEP02649 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.24■□□□□ 0.19
APOEP02649 RN7SL399P-201ENST00000471648 279 ntBASIC16.24■□□□□ 0.19
APOEP02649 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.24■□□□□ 0.19
APOEP02649 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
APOEP02649 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 CHCHD2P3-201ENST00000603038 451 ntBASIC16.24■□□□□ 0.19
APOEP02649 AC008494.3-201ENST00000606615 944 ntBASIC16.24■□□□□ 0.19
APOEP02649 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.24■□□□□ 0.19
APOEP02649 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 AC092127.1-201ENST00000567093 3455 ntBASIC16.24■□□□□ 0.19
APOEP02649 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.24■□□□□ 0.19
APOEP02649 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
APOEP02649 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
APOEP02649 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 AC127383.1-201ENST00000444697 1800 ntBASIC16.24■□□□□ 0.19
APOEP02649 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.24■□□□□ 0.19
APOEP02649 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 AC105250.1-201ENST00000509378 2057 ntBASIC16.23■□□□□ 0.19
APOEP02649 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 CLK3P2-201ENST00000427566 1453 ntBASIC16.23■□□□□ 0.19
APOEP02649 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
APOEP02649 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.23■□□□□ 0.19
APOEP02649 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.23■□□□□ 0.19
APOEP02649 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 MYCLP2-201ENST00000449268 967 ntBASIC16.23■□□□□ 0.19
APOEP02649 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 FAM86LP-201ENST00000478302 853 ntBASIC16.23■□□□□ 0.19
APOEP02649 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.23■□□□□ 0.19
APOEP02649 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.23■□□□□ 0.19
APOEP02649 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.23■□□□□ 0.19
APOEP02649 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
APOEP02649 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOEP02649 AL161772.1-201ENST00000610494 4412 ntBASIC16.22■□□□□ 0.19
APOEP02649 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
APOEP02649 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 AC090616.6-203ENST00000579186 1945 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms