Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.89□□□□□ -0.03
SEMA3DO95025 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SEMA3DO95025 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.89□□□□□ -0.03
SEMA3DO95025 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
SEMA3DO95025 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.89□□□□□ -0.03
SEMA3DO95025 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SEMA3DO95025 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SEMA3DO95025 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.89□□□□□ -0.03
SEMA3DO95025 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SEMA3DO95025 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SEMA3DO95025 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.88□□□□□ -0.03
SEMA3DO95025 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
SEMA3DO95025 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.88□□□□□ -0.03
SEMA3DO95025 DUX4L27-201ENST00000554796 1261 ntBASIC14.88□□□□□ -0.03
SEMA3DO95025 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.88□□□□□ -0.03
SEMA3DO95025 GPALPP1-207ENST00000611650 899 ntBASIC14.88□□□□□ -0.03
SEMA3DO95025 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.88□□□□□ -0.03
SEMA3DO95025 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
SEMA3DO95025 AL645728.2-202ENST00000641679 227 ntBASIC14.88□□□□□ -0.03
SEMA3DO95025 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.88□□□□□ -0.03
SEMA3DO95025 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 AP002414.2-201ENST00000591780 3365 ntBASIC14.88□□□□□ -0.03
SEMA3DO95025 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.88□□□□□ -0.03
SEMA3DO95025 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SEMA3DO95025 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SEMA3DO95025 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.87□□□□□ -0.03
SEMA3DO95025 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SEMA3DO95025 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 AC055876.3-201ENST00000431496 288 ntBASIC14.87□□□□□ -0.03
SEMA3DO95025 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.87□□□□□ -0.03
SEMA3DO95025 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.87□□□□□ -0.03
SEMA3DO95025 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.87□□□□□ -0.03
SEMA3DO95025 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.87□□□□□ -0.03
SEMA3DO95025 AC138649.4-201ENST00000612222 287 ntBASIC14.87□□□□□ -0.03
SEMA3DO95025 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.87□□□□□ -0.03
SEMA3DO95025 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.87□□□□□ -0.03
SEMA3DO95025 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.87□□□□□ -0.03
SEMA3DO95025 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.87□□□□□ -0.03
SEMA3DO95025 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.87□□□□□ -0.03
SEMA3DO95025 AL121723.1-201ENST00000445194 1519 ntBASIC14.87□□□□□ -0.03
SEMA3DO95025 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SEMA3DO95025 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SEMA3DO95025 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.86□□□□□ -0.03
SEMA3DO95025 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms