Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 KRT17P4-201ENST00000429445 819 ntBASIC21.15■□□□□ 0.98
NPHP4O75161 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC21.15■□□□□ 0.98
NPHP4O75161 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP4O75161 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP4O75161 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP4O75161 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP4O75161 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 AC018629.1-201ENST00000623381 1736 ntBASIC21.15■□□□□ 0.98
NPHP4O75161 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 PGR-209ENST00000617858 2816 ntTSL 5 BASIC21.14■□□□□ 0.98
NPHP4O75161 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP4O75161 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP4O75161 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP4O75161 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC21.14■□□□□ 0.98
NPHP4O75161 CICP12-201ENST00000455801 843 ntBASIC21.14■□□□□ 0.98
NPHP4O75161 AC114947.1-202ENST00000514136 344 ntBASIC21.14■□□□□ 0.98
NPHP4O75161 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.98
NPHP4O75161 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC21.14■□□□□ 0.98
NPHP4O75161 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC21.14■□□□□ 0.98
NPHP4O75161 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
NPHP4O75161 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NPHP4O75161 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NPHP4O75161 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP4O75161 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NPHP4O75161 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 XBP1P1-201ENST00000436573 652 ntBASIC21.13■□□□□ 0.97
NPHP4O75161 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC21.13■□□□□ 0.97
NPHP4O75161 ALG3P1-201ENST00000508806 1114 ntBASIC21.13■□□□□ 0.97
NPHP4O75161 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC21.13■□□□□ 0.97
NPHP4O75161 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC21.13■□□□□ 0.97
NPHP4O75161 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP4O75161 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
NPHP4O75161 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 ZBTB45P1-201ENST00000452761 1456 ntBASIC21.13■□□□□ 0.97
NPHP4O75161 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NPHP4O75161 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP4O75161 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP4O75161 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
NPHP4O75161 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP4O75161 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP4O75161 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP4O75161 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC21.12■□□□□ 0.97
NPHP4O75161 HLA-DMA-203ENST00000395305 777 ntBASIC21.12■□□□□ 0.97
NPHP4O75161 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP4O75161 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC21.12■□□□□ 0.97
NPHP4O75161 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP4O75161 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC21.12■□□□□ 0.97
NPHP4O75161 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP4O75161 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC21.12■□□□□ 0.97
NPHP4O75161 NAMA-206ENST00000605377 509 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 AL451007.2-201ENST00000632004 563 ntBASIC21.12■□□□□ 0.97
NPHP4O75161 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NPHP4O75161 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NPHP4O75161 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NPHP4O75161 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NPHP4O75161 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 RPL5P21-201ENST00000404620 815 ntBASIC21.12■□□□□ 0.97
NPHP4O75161 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms