Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.56□□□□□ -0.08
LDB3O75112 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.56□□□□□ -0.08
LDB3O75112 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LDB3O75112 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 AL596257.1-201ENST00000641463 2694 ntBASIC14.56□□□□□ -0.08
LDB3O75112 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.55□□□□□ -0.08
LDB3O75112 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.55□□□□□ -0.08
LDB3O75112 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.55□□□□□ -0.08
LDB3O75112 AC092552.1-201ENST00000547243 906 ntBASIC14.55□□□□□ -0.08
LDB3O75112 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 CTBP2P3-201ENST00000585629 1255 ntBASIC14.55□□□□□ -0.08
LDB3O75112 BRI3BPP1-201ENST00000594224 787 ntBASIC14.55□□□□□ -0.08
LDB3O75112 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.55□□□□□ -0.08
LDB3O75112 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.55□□□□□ -0.08
LDB3O75112 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.55□□□□□ -0.08
LDB3O75112 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 KRT8P44-201ENST00000441609 1350 ntBASIC14.55□□□□□ -0.08
LDB3O75112 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 DRD5P1-201ENST00000456605 1438 ntBASIC14.55□□□□□ -0.08
LDB3O75112 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
LDB3O75112 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.55□□□□□ -0.08
LDB3O75112 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDB3O75112 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.55□□□□□ -0.08
LDB3O75112 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
LDB3O75112 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 DGCR5-201ENST00000399539 862 ntBASIC14.54□□□□□ -0.08
LDB3O75112 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.54□□□□□ -0.08
LDB3O75112 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 AC107373.2-201ENST00000607735 490 ntBASIC14.54□□□□□ -0.08
LDB3O75112 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms