Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
MSH5O43196 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH5O43196 ANP32E-203ENST00000436748 1339 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 MDH1-216ENST00000544381 1346 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
MSH5O43196 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 PIN1P1-201ENST00000412108 996 ntBASIC21.81■■□□□ 1.08
MSH5O43196 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH5O43196 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 BLNK-204ENST00000427367 1284 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 AC002558.1-201ENST00000488906 803 ntBASIC21.81■■□□□ 1.08
MSH5O43196 F11-205ENST00000492972 1204 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 LAMTOR3P2-201ENST00000504479 232 ntBASIC21.81■■□□□ 1.08
MSH5O43196 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH5O43196 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH5O43196 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
MSH5O43196 NIFKP6-201ENST00000598115 845 ntBASIC21.81■■□□□ 1.08
MSH5O43196 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH5O43196 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
MSH5O43196 AL157902.2-201ENST00000623435 1492 ntBASIC21.81■■□□□ 1.08
MSH5O43196 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 TNRC18P2-201ENST00000417666 2714 ntBASIC21.81■■□□□ 1.08
MSH5O43196 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH5O43196 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH5O43196 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH5O43196 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH5O43196 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH5O43196 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSH5O43196 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC21.8■■□□□ 1.08
MSH5O43196 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH5O43196 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC21.8■■□□□ 1.08
MSH5O43196 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH5O43196 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH5O43196 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC21.8■■□□□ 1.08
MSH5O43196 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH5O43196 KATNBL1P5-201ENST00000605015 517 ntBASIC21.8■■□□□ 1.08
MSH5O43196 Z99289.3-201ENST00000605586 594 ntBASIC21.8■■□□□ 1.08
MSH5O43196 AC004233.3-201ENST00000607794 1269 ntBASIC21.8■■□□□ 1.08
MSH5O43196 AC003992.1-201ENST00000635364 557 ntBASIC21.8■■□□□ 1.08
MSH5O43196 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH5O43196 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms