Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ACTBP8-201ENST00000403258 1108 ntBASIC17.27■□□□□ 0.36
MSH4O15457 ARSEP1-201ENST00000420443 635 ntBASIC17.27■□□□□ 0.36
MSH4O15457 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH4O15457 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.27■□□□□ 0.36
MSH4O15457 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 KRT18P25-201ENST00000508931 1278 ntBASIC17.27■□□□□ 0.36
MSH4O15457 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.27■□□□□ 0.36
MSH4O15457 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
MSH4O15457 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.27■□□□□ 0.36
MSH4O15457 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.27■□□□□ 0.36
MSH4O15457 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.27■□□□□ 0.36
MSH4O15457 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
MSH4O15457 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 AC145423.3-201ENST00000615987 467 ntBASIC17.27■□□□□ 0.36
MSH4O15457 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 KRT8P14-201ENST00000414254 1442 ntBASIC17.27■□□□□ 0.35
MSH4O15457 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.27■□□□□ 0.35
MSH4O15457 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
MSH4O15457 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH4O15457 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.26■□□□□ 0.35
MSH4O15457 GPR53P-205ENST00000457298 1084 ntBASIC17.26■□□□□ 0.35
MSH4O15457 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 MROH4P-201ENST00000431302 1578 ntBASIC17.26■□□□□ 0.35
MSH4O15457 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
MSH4O15457 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH4O15457 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MSH4O15457 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 AC012508.2-201ENST00000567613 1472 ntBASIC17.25■□□□□ 0.35
MSH4O15457 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
MSH4O15457 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.25■□□□□ 0.35
MSH4O15457 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.25■□□□□ 0.35
MSH4O15457 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.25■□□□□ 0.35
MSH4O15457 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.25■□□□□ 0.35
MSH4O15457 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.25■□□□□ 0.35
MSH4O15457 FTH1P14-201ENST00000482930 551 ntBASIC17.25■□□□□ 0.35
MSH4O15457 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.25■□□□□ 0.35
MSH4O15457 SNX29P1-201ENST00000548357 1007 ntBASIC17.25■□□□□ 0.35
MSH4O15457 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.25■□□□□ 0.35
MSH4O15457 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms