Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ELK2BP-201ENST00000415014 1224 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HMGB3O15347 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.53□□□□□ -0.4
HMGB3O15347 DUX4L26-201ENST00000489078 1255 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 AC093827.2-201ENST00000512654 315 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC12.53□□□□□ -0.4
HMGB3O15347 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
HMGB3O15347 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 MPI-205ENST00000562606 1052 ntTSL 3 BASIC12.53□□□□□ -0.4
HMGB3O15347 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC12.53□□□□□ -0.4
HMGB3O15347 AL139288.1-201ENST00000623748 933 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
HMGB3O15347 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.52□□□□□ -0.4
HMGB3O15347 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HMGB3O15347 AC126365.1-201ENST00000578585 1514 ntBASIC12.52□□□□□ -0.4
HMGB3O15347 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HMGB3O15347 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
HMGB3O15347 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.52□□□□□ -0.4
HMGB3O15347 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HMGB3O15347 CDC42BPA-203ENST00000366766 10610 ntTSL 5 BASIC12.52□□□□□ -0.4
HMGB3O15347 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
HMGB3O15347 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 GUK1-204ENST00000366721 689 ntTSL 3 BASIC12.52□□□□□ -0.41
HMGB3O15347 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
HMGB3O15347 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC12.52□□□□□ -0.41
HMGB3O15347 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.52□□□□□ -0.41
HMGB3O15347 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC12.52□□□□□ -0.41
HMGB3O15347 AC138894.3-201ENST00000603787 634 ntBASIC12.52□□□□□ -0.41
HMGB3O15347 AC069148.1-201ENST00000608741 768 ntBASIC12.52□□□□□ -0.41
HMGB3O15347 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HMGB3O15347 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 AC129492.6-201ENST00000611383 1305 ntBASIC12.52□□□□□ -0.41
HMGB3O15347 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 AC010336.1-201ENST00000539278 4739 ntBASIC12.52□□□□□ -0.41
HMGB3O15347 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.52□□□□□ -0.41
HMGB3O15347 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.52□□□□□ -0.41
HMGB3O15347 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HMGB3O15347 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 KDM2A-210ENST00000529006 6967 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 DPY19L1-201ENST00000310974 4870 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
HMGB3O15347 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms