Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.68□□□□□ -0.06
UPK1AO00322 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.68□□□□□ -0.06
UPK1AO00322 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
UPK1AO00322 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
UPK1AO00322 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
UPK1AO00322 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
UPK1AO00322 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC100757.3-201ENST00000622361 1406 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC117489.1-201ENST00000625169 3217 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
UPK1AO00322 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 KRT18P64-201ENST00000434946 1219 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.67□□□□□ -0.06
UPK1AO00322 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.67□□□□□ -0.06
UPK1AO00322 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 SLED1-202ENST00000512051 380 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.67□□□□□ -0.06
UPK1AO00322 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.67□□□□□ -0.06
UPK1AO00322 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 AL844908.2-201ENST00000609461 460 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 AL590560.3-201ENST00000623350 461 ntBASIC14.67□□□□□ -0.06
UPK1AO00322 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.67□□□□□ -0.06
UPK1AO00322 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
UPK1AO00322 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
UPK1AO00322 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.66□□□□□ -0.06
UPK1AO00322 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.66□□□□□ -0.06
UPK1AO00322 FAM8A3P-201ENST00000427218 844 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 RPL13P2-201ENST00000440687 659 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
UPK1AO00322 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
UPK1AO00322 AC074044.1-201ENST00000609673 707 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.66□□□□□ -0.06
UPK1AO00322 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
UPK1AO00322 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
UPK1AO00322 AF228730.6-201ENST00000641497 218 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 AC084121.3-201ENST00000641716 218 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 AL109936.8-201ENST00000641772 604 ntBASIC14.66□□□□□ -0.06
UPK1AO00322 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
UPK1AO00322 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms