Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 PCDHB19P-201ENST00000570871 2371 ntBASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 CICP12-201ENST00000455801 843 ntBASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 RPS15-202ENST00000585665 467 ntTSL 3 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 KRT8P31-201ENST00000504812 1408 ntBASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 RBM8B-201ENST00000555532 525 ntBASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK3Q9BYB0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 PUDPP3-201ENST00000445368 636 ntBASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 RPL18AP3-201ENST00000462885 528 ntBASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK3Q9BYB0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AC015909.3-201ENST00000572855 1794 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AC012441.2-201ENST00000444843 739 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 RN7SL258P-201ENST00000478664 300 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AC131206.1-201ENST00000538078 1211 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PHBP15-201ENST00000574228 665 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AC005632.3-201ENST00000605544 308 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 FRMPD2B-201ENST00000431305 1347 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AC012508.2-201ENST00000567613 1472 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 AL139384.1-201ENST00000612143 3047 ntBASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK3Q9BYB0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms