Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 CD8B2-202ENST00000417670 633 ntBASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 AC022616.1-201ENST00000518688 554 ntBASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 AC104989.1-201ENST00000519711 778 ntBASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 MIR6752-201ENST00000618442 71 ntBASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CHMP4AQ9BY43 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 KLF2P4-201ENST00000451959 1225 ntBASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 AC025279.2-201ENST00000569730 653 ntBASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 AC126365.1-201ENST00000578585 1514 ntBASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP4AQ9BY43 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 AC067930.6-201ENST00000623257 4947 ntBASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4AQ9BY43 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 RPL7P3-201ENST00000441388 714 ntBASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 IFT20-216ENST00000588477 774 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms