Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.96□□□□□ -0.34
PDLIM3Q53GG5 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 KRT18P34-201ENST00000488218 1270 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 GIMAP3P-201ENST00000495150 836 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC069120.2-201ENST00000524091 540 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC087481.3-201ENST00000602886 1894 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC105250.1-201ENST00000509378 2057 ntBASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PDLIM3Q53GG5 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 AL589702.1-201ENST00000641229 1509 ntBASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PDLIM3Q53GG5 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms