Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC011742.3-201ENST00000439053 820 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC006335.1-201ENST00000445200 547 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC009955.4-201ENST00000597192 544 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 LINC02199-201ENST00000506655 2702 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC092127.1-201ENST00000567093 3455 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AC105250.1-201ENST00000509378 2057 ntBASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC88AQ3V6T2 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 AL645937.2-201ENST00000396808 931 ntBASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 RPS9P1-201ENST00000419943 583 ntBASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 AC007718.1-201ENST00000621078 280 ntBASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 AL353770.1-201ENST00000614915 403 ntBASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC88AQ3V6T2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 AL365203.3-201ENST00000609742 2057 ntBASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 AC138466.3-201ENST00000619983 221 ntBASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms