Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNF4P78317 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
RNF4P78317 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.33□□□□□ -0.12
RNF4P78317 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 AC007389.4-201ENST00000454674 793 ntBASIC14.33□□□□□ -0.12
RNF4P78317 GIMAP3P-201ENST00000495150 836 ntBASIC14.33□□□□□ -0.12
RNF4P78317 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.33□□□□□ -0.12
RNF4P78317 AC010319.3-201ENST00000597028 470 ntBASIC14.33□□□□□ -0.12
RNF4P78317 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.33□□□□□ -0.12
RNF4P78317 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
RNF4P78317 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 AL138799.1-201ENST00000448213 1675 ntBASIC14.33□□□□□ -0.12
RNF4P78317 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.33□□□□□ -0.12
RNF4P78317 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNF4P78317 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RNF4P78317 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 TTTY23B-201ENST00000442790 549 ntBASIC14.32□□□□□ -0.12
RNF4P78317 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.32□□□□□ -0.12
RNF4P78317 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.32□□□□□ -0.12
RNF4P78317 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.32□□□□□ -0.12
RNF4P78317 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.32□□□□□ -0.12
RNF4P78317 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.32□□□□□ -0.12
RNF4P78317 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.32□□□□□ -0.12
RNF4P78317 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.32□□□□□ -0.12
RNF4P78317 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 AC239800.4-201ENST00000603712 296 ntBASIC14.32□□□□□ -0.12
RNF4P78317 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.32□□□□□ -0.12
RNF4P78317 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 AL645728.2-202ENST00000641679 227 ntBASIC14.32□□□□□ -0.12
RNF4P78317 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RNF4P78317 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RNF4P78317 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNF4P78317 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms