Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH6P52701 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
MSH6P52701 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH6P52701 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH6P52701 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
MSH6P52701 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MSH6P52701 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.05■□□□□ 0.96
MSH6P52701 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH6P52701 HCG11-201ENST00000411553 5696 ntBASIC21.05■□□□□ 0.96
MSH6P52701 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH6P52701 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MSH6P52701 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH6P52701 AK6-201ENST00000380818 1183 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 RPL18AP3-201ENST00000462885 528 ntBASIC21.05■□□□□ 0.96
MSH6P52701 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC21.05■□□□□ 0.96
MSH6P52701 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC21.05■□□□□ 0.96
MSH6P52701 AC138466.4-201ENST00000623965 852 ntBASIC21.05■□□□□ 0.96
MSH6P52701 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC21.05■□□□□ 0.96
MSH6P52701 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MSH6P52701 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MSH6P52701 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH6P52701 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MSH6P52701 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH6P52701 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
MSH6P52701 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
MSH6P52701 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH6P52701 KRT8P21-201ENST00000430398 1491 ntBASIC21.04■□□□□ 0.96
MSH6P52701 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC21.04■□□□□ 0.96
MSH6P52701 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC21.04■□□□□ 0.96
MSH6P52701 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC21.04■□□□□ 0.96
MSH6P52701 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC21.04■□□□□ 0.96
MSH6P52701 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH6P52701 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC21.04■□□□□ 0.96
MSH6P52701 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 AC148477.9-201ENST00000623974 539 ntBASIC21.04■□□□□ 0.96
MSH6P52701 AL161773.1-201ENST00000624845 863 ntBASIC21.04■□□□□ 0.96
MSH6P52701 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH6P52701 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH6P52701 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH6P52701 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 FAM90A7P-201ENST00000382628 1395 ntBASIC21.03■□□□□ 0.96
MSH6P52701 FAM90A23P-201ENST00000400136 1395 ntBASIC21.03■□□□□ 0.96
MSH6P52701 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 SOD2-202ENST00000367054 815 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH6P52701 DUX4L47-201ENST00000566374 394 ntBASIC21.03■□□□□ 0.96
MSH6P52701 AP001527.2-201ENST00000614441 631 ntBASIC21.03■□□□□ 0.96
MSH6P52701 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC21.03■□□□□ 0.96
MSH6P52701 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH6P52701 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
MSH6P52701 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH6P52701 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
MSH6P52701 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms