Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 AC007787.1-201ENST00000588095 1583 ntBASIC16.06■□□□□ 0.16
PTPN9P43378 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.06■□□□□ 0.16
PTPN9P43378 AC134915.1-201ENST00000426461 574 ntBASIC16.06■□□□□ 0.16
PTPN9P43378 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.06■□□□□ 0.16
PTPN9P43378 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.06■□□□□ 0.16
PTPN9P43378 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN9P43378 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN9P43378 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PTPN9P43378 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PTPN9P43378 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 TERF1P3-201ENST00000505638 1227 ntBASIC16.05■□□□□ 0.16
PTPN9P43378 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PTPN9P43378 AC124283.3-201ENST00000570869 594 ntBASIC16.05■□□□□ 0.16
PTPN9P43378 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.05■□□□□ 0.16
PTPN9P43378 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.05■□□□□ 0.16
PTPN9P43378 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN9P43378 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTPN9P43378 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN9P43378 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN9P43378 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN9P43378 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 FER1L4-210ENST00000615531 5998 ntBASIC16.04■□□□□ 0.16
PTPN9P43378 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN9P43378 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN9P43378 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms