Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 AC000095.1-201ENST00000603208 874 ntBASIC13.51□□□□□ -0.25
COL8A1P27658 AL645939.5-201ENST00000606834 243 ntBASIC13.51□□□□□ -0.25
COL8A1P27658 AC244157.2-201ENST00000616239 1006 ntBASIC13.51□□□□□ -0.25
COL8A1P27658 BNIP3P41-202ENST00000616656 861 ntBASIC13.51□□□□□ -0.25
COL8A1P27658 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
COL8A1P27658 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.5□□□□□ -0.25
COL8A1P27658 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.5□□□□□ -0.25
COL8A1P27658 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 MIR1227-201ENST00000408484 88 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 CD8B2-202ENST00000417670 633 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 AC079178.1-201ENST00000420915 656 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.5□□□□□ -0.25
COL8A1P27658 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 AC098935.1-201ENST00000446057 611 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 RN7SL8P-201ENST00000461771 266 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 AC005740.2-201ENST00000511085 419 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 NPM1P43-201ENST00000558669 786 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 AC015910.1-201ENST00000579400 975 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.5□□□□□ -0.25
COL8A1P27658 COX6A1P2-201ENST00000620597 330 ntBASIC13.5□□□□□ -0.25
COL8A1P27658 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL8A1P27658 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.5□□□□□ -0.25
COL8A1P27658 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL8A1P27658 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms