Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.62■□□□□ 0.09
VCANP13611 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 FAM197Y6-201ENST00000420524 766 ntBASIC15.62■□□□□ 0.09
VCANP13611 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
VCANP13611 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
VCANP13611 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 AL512324.3-201ENST00000619383 882 ntBASIC15.62■□□□□ 0.09
VCANP13611 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.62■□□□□ 0.09
VCANP13611 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 AC113347.2-201ENST00000512350 279 ntBASIC15.62■□□□□ 0.09
VCANP13611 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 RN7SL470P-201ENST00000583069 259 ntBASIC15.62■□□□□ 0.09
VCANP13611 AL109837.1-201ENST00000603272 613 ntBASIC15.62■□□□□ 0.09
VCANP13611 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.62■□□□□ 0.09
VCANP13611 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.62■□□□□ 0.09
VCANP13611 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.61■□□□□ 0.09
VCANP13611 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.61■□□□□ 0.09
VCANP13611 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.61■□□□□ 0.09
VCANP13611 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.61■□□□□ 0.09
VCANP13611 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.61■□□□□ 0.09
VCANP13611 AL157813.1-201ENST00000612996 587 ntBASIC15.61■□□□□ 0.09
VCANP13611 AP001184.1-201ENST00000637936 376 ntBASIC15.61■□□□□ 0.09
VCANP13611 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
VCANP13611 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
VCANP13611 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 AF274858.1-201ENST00000406288 372 ntBASIC15.61■□□□□ 0.09
VCANP13611 AC010141.1-201ENST00000411585 623 ntBASIC15.61■□□□□ 0.09
VCANP13611 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.61■□□□□ 0.09
VCANP13611 RN7SL173P-201ENST00000461853 292 ntBASIC15.61■□□□□ 0.09
VCANP13611 MIR6769A-201ENST00000617340 73 ntBASIC15.61■□□□□ 0.09
VCANP13611 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.61■□□□□ 0.09
VCANP13611 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
VCANP13611 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.61■□□□□ 0.09
VCANP13611 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
VCANP13611 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.61■□□□□ 0.09
VCANP13611 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VCANP13611 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC15.61■□□□□ 0.09
VCANP13611 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCANP13611 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.61■□□□□ 0.09
VCANP13611 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC15.61■□□□□ 0.09
VCANP13611 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.61■□□□□ 0.09
VCANP13611 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 LRRC59-203ENST00000576448 1531 ntBASIC15.6■□□□□ 0.09
VCANP13611 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 MAGEA7P-201ENST00000436482 942 ntBASIC15.6■□□□□ 0.09
VCANP13611 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.6■□□□□ 0.09
VCANP13611 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC15.6■□□□□ 0.09
VCANP13611 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.6■□□□□ 0.09
VCANP13611 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
VCANP13611 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.6■□□□□ 0.09
VCANP13611 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.6■□□□□ 0.09
VCANP13611 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 AL583805.1-201ENST00000391389 531 ntBASIC15.6■□□□□ 0.09
VCANP13611 MIR4472-1-201ENST00000584349 80 ntBASIC15.6■□□□□ 0.09
VCANP13611 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
VCANP13611 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms