Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD4P09016 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 CDC14C-201ENST00000428251 1719 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD4P09016 AC134915.1-201ENST00000426461 574 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
HOXD4P09016 ACTG1P3-201ENST00000431775 1114 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD4P09016 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 AC092658.1-201ENST00000505836 891 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
HOXD4P09016 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 COX11-210ENST00000639671 696 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 REXO1L1P-202ENST00000608646 1974 ntBASIC14.1□□□□□ -0.15
HOXD4P09016 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
HOXD4P09016 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
HOXD4P09016 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD4P09016 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HOXD4P09016 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HOXD4P09016 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
HOXD4P09016 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.09□□□□□ -0.15
HOXD4P09016 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXD4P09016 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXD4P09016 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms