Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 AC004987.2-201ENST00000395959 1148 ntBASIC15.51■□□□□ 0.07
SHOX2O60902 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 FAM210CP-201ENST00000445714 574 ntBASIC15.51■□□□□ 0.07
SHOX2O60902 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 FOSL1P1-201ENST00000511041 816 ntBASIC15.51■□□□□ 0.07
SHOX2O60902 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.51■□□□□ 0.07
SHOX2O60902 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC15.51■□□□□ 0.07
SHOX2O60902 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHOX2O60902 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHOX2O60902 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.5■□□□□ 0.07
SHOX2O60902 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.5■□□□□ 0.07
SHOX2O60902 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.5■□□□□ 0.07
SHOX2O60902 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.5■□□□□ 0.07
SHOX2O60902 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.5■□□□□ 0.07
SHOX2O60902 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.5■□□□□ 0.07
SHOX2O60902 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SHOX2O60902 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHOX2O60902 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SHOX2O60902 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHOX2O60902 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.5■□□□□ 0.07
SHOX2O60902 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.49■□□□□ 0.07
SHOX2O60902 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
SHOX2O60902 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 ATP5G2P1-201ENST00000433580 426 ntBASIC15.49■□□□□ 0.07
SHOX2O60902 PHKG1P2-201ENST00000457537 863 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms