Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.69■□□□□ 0.1
HOXC11O43248 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 AC104457.1-201ENST00000401024 814 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 GOLGA2P4-201ENST00000441462 777 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 Z93015.1-201ENST00000451718 390 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC11O43248 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC11O43248 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC11O43248 ENPP7P14-201ENST00000621765 1040 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 AL603764.1-201ENST00000636452 321 ntBASIC15.69■□□□□ 0.1
HOXC11O43248 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC11O43248 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.68■□□□□ 0.1
HOXC11O43248 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.68■□□□□ 0.1
HOXC11O43248 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.68■□□□□ 0.1
HOXC11O43248 AC091271.1-201ENST00000611877 1162 ntBASIC15.68■□□□□ 0.1
HOXC11O43248 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 GPR182-203ENST00000622922 591 ntBASIC15.68■□□□□ 0.1
HOXC11O43248 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXC11O43248 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 AC092127.1-201ENST00000567093 3455 ntBASIC15.68■□□□□ 0.1
HOXC11O43248 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC11O43248 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC11O43248 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 MIR326-201ENST00000362220 95 ntBASIC15.67■□□□□ 0.1
HOXC11O43248 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms