Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
NPHP1O15259 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP1O15259 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.51■□□□□ 0.71
NPHP1O15259 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
NPHP1O15259 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.51■□□□□ 0.71
NPHP1O15259 RNA5SP486-201ENST00000515961 83 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 RHOQP1-201ENST00000555758 579 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.51■□□□□ 0.71
NPHP1O15259 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 AL021578.1-201ENST00000613646 709 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP1O15259 AL008638.5-201ENST00000623814 1298 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 AC132938.4-201ENST00000623835 848 ntBASIC19.51■□□□□ 0.71
NPHP1O15259 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP1O15259 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP1O15259 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP1O15259 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
NPHP1O15259 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 LINC02199-201ENST00000506655 2702 ntBASIC19.5■□□□□ 0.71
NPHP1O15259 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
NPHP1O15259 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
NPHP1O15259 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.5■□□□□ 0.71
NPHP1O15259 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.5■□□□□ 0.71
NPHP1O15259 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP1O15259 AC104982.3-201ENST00000581995 514 ntBASIC19.5■□□□□ 0.71
NPHP1O15259 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP1O15259 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 AC005695.3-201ENST00000614522 232 ntBASIC19.5■□□□□ 0.71
NPHP1O15259 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
NPHP1O15259 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
NPHP1O15259 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NPHP1O15259 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP1O15259 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP1O15259 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
NPHP1O15259 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP1O15259 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NPHP1O15259 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.49■□□□□ 0.71
NPHP1O15259 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP1O15259 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP1O15259 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.49■□□□□ 0.71
NPHP1O15259 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.49■□□□□ 0.71
NPHP1O15259 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
NPHP1O15259 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.49■□□□□ 0.71
NPHP1O15259 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
NPHP1O15259 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NPHP1O15259 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
NPHP1O15259 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP1O15259 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms