Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
SMKR1H3BMG3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
SMKR1H3BMG3 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.4□□□□□ -0.59
SMKR1H3BMG3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
SMKR1H3BMG3 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 BEND3P1-201ENST00000421591 1944 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 KRT18P27-201ENST00000427733 1299 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AL513480.1-201ENST00000451731 511 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AL031432.2-201ENST00000566714 459 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AL928711.1-201ENST00000570165 459 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AL078644.1-201ENST00000609881 752 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AC004790.2-201ENST00000623588 572 ntBASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 FES-203ENST00000394302 2133 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SMKR1H3BMG3 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AP001267.2-201ENST00000532619 2086 ntBASIC11.38□□□□□ -0.59
SMKR1H3BMG3 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms