Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC093028.1-201ENST00000622998 982 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 LINC00528-201ENST00000600723 2160 ntBASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC068418.2-201ENST00000577309 3703 ntBASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC092580.3-201ENST00000430932 139 ntBASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ZNF890P-202ENST00000530367 1156 ntBASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS29Q9UBQ0 CICP24-201ENST00000605464 2705 ntBASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 AL121723.1-201ENST00000445194 1519 ntBASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 AL645728.2-202ENST00000641679 227 ntBASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms