Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 AC007967.4-201ENST00000614700 386 ntBASIC15.28■□□□□ 0.04
MKS1Q9NXB0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MKS1Q9NXB0 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 AL928921.2-201ENST00000641325 2442 ntBASIC15.27■□□□□ 0.04
MKS1Q9NXB0 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 LILRP1-201ENST00000444199 1370 ntBASIC15.27■□□□□ 0.04
MKS1Q9NXB0 AL035456.1-201ENST00000456064 1369 ntBASIC15.27■□□□□ 0.04
MKS1Q9NXB0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 MKNK2P1-201ENST00000437526 628 ntBASIC15.27■□□□□ 0.04
MKS1Q9NXB0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
MKS1Q9NXB0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms