Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC091951.1-201ENST00000512854 2465 ntBASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GPX1P2-201ENST00000429271 606 ntBASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AC074386.1-202ENST00000463561 864 ntBASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 AC090616.6-203ENST00000579186 1945 ntBASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHMP1AQ9HD42 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AC098859.1-201ENST00000502915 1238 ntBASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms