Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 GHSR-202ENST00000427970 912 ntBASIC16.03■□□□□ 0.16
PCDH9Q9HC56 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AC010336.2-201ENST00000564226 506 ntBASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AC011467.4-201ENST00000594891 528 ntBASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH9Q9HC56 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 AC023908.3-201ENST00000564211 3047 ntBASIC16.02■□□□□ 0.16
PCDH9Q9HC56 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 TSSK5P-201ENST00000423978 907 ntBASIC16.02■□□□□ 0.16
PCDH9Q9HC56 AC093214.1-201ENST00000511688 1107 ntBASIC16.02■□□□□ 0.16
PCDH9Q9HC56 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH9Q9HC56 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH9Q9HC56 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms