Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 MIR600HG-201ENST00000449175 5984 ntBASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AC105250.1-201ENST00000509378 2057 ntBASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AC005225.4-201ENST00000557330 545 ntBASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AL049840.4-201ENST00000602422 811 ntBASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AC013268.4-201ENST00000637413 2228 ntBASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.63□□□□□ -0.07
PTCHD1Q96NR3 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 PPT1-215ENST00000641471 2368 ntBASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AC134915.1-201ENST00000426461 574 ntBASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 RN7SL752P-201ENST00000463779 287 ntBASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 BRI3BPP1-201ENST00000594224 787 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms