Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
DEPDC4Q8N2C3 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 HMGA1P7-201ENST00000406908 502 ntBASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 RN7SL589P-201ENST00000481268 310 ntBASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
DEPDC4Q8N2C3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AL645939.2-201ENST00000427340 991 ntBASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 KRT18P34-201ENST00000488218 1270 ntBASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AC026120.1-201ENST00000611536 926 ntBASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 AC005840.4-201ENST00000541242 2494 ntBASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.54□□□□□ -0.08
DEPDC4Q8N2C3 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms