Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 AC015936.2-201ENST00000593177 259 ntBASIC14.45□□□□□ -0.1
BEST3Q8N1M1 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 RPSAP52-203ENST00000622976 1023 ntBASIC14.45□□□□□ -0.1
BEST3Q8N1M1 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.45□□□□□ -0.1
BEST3Q8N1M1 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
BEST3Q8N1M1 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 VDAC1P7-201ENST00000462417 847 ntBASIC14.44□□□□□ -0.1
BEST3Q8N1M1 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.44□□□□□ -0.1
BEST3Q8N1M1 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 AC144831.1-201ENST00000573312 2656 ntBASIC14.44□□□□□ -0.1
BEST3Q8N1M1 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 AC069224.1-201ENST00000566372 1715 ntBASIC14.44□□□□□ -0.1
BEST3Q8N1M1 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BEST3Q8N1M1 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 AL161772.1-201ENST00000610494 4412 ntBASIC14.43□□□□□ -0.1
BEST3Q8N1M1 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
BEST3Q8N1M1 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms