Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC092552.1-201ENST00000547243 906 ntBASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TP53TG3HP-202ENST00000569755 579 ntBASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 SPDYE22P-201ENST00000582158 798 ntBASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 CTBP2P3-201ENST00000585629 1255 ntBASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 DBET-201ENST00000630918 3363 ntBASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.31■□□□□ 0.2
SCUBE3Q8IX30 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 BRI3BPP1-201ENST00000594224 787 ntBASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AL049840.4-201ENST00000602422 811 ntBASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AC010326.4-201ENST00000604665 891 ntBASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 AC104640.1-201ENST00000562617 2109 ntBASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCUBE3Q8IX30 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 DRD5P1-201ENST00000456605 1438 ntBASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 KRT8P44-201ENST00000441609 1350 ntBASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 DGCR5-201ENST00000399539 862 ntBASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 NME2P1-201ENST00000426182 414 ntBASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 VDAC1P7-201ENST00000462417 847 ntBASIC16.29■□□□□ 0.2
SCUBE3Q8IX30 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms