Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC138969.3-201ENST00000546612 1459 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC138932.2-201ENST00000548268 1459 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC126755.4-201ENST00000549796 1459 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 SLC7A15P-201ENST00000424028 1363 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 KRT8P44-201ENST00000441609 1350 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 TERF1P3-201ENST00000505638 1227 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC015910.1-201ENST00000579400 975 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 MIR3197-201ENST00000582241 73 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC004233.3-201ENST00000607794 1269 ntBASIC18.72■□□□□ 0.59
VPS53Q5VIR6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 RARRES2P5-201ENST00000564013 466 ntBASIC18.71■□□□□ 0.59
VPS53Q5VIR6 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.71■□□□□ 0.59
VPS53Q5VIR6 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 MST1L-201ENST00000442552 2185 ntBASIC18.71■□□□□ 0.59
VPS53Q5VIR6 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS53Q5VIR6 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS53Q5VIR6 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS53Q5VIR6 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
VPS53Q5VIR6 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms