Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIG3P49916 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.43■□□□□ 0.22
LIG3P49916 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
LIG3P49916 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.43■□□□□ 0.22
LIG3P49916 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.43■□□□□ 0.22
LIG3P49916 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIG3P49916 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
LIG3P49916 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIG3P49916 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.42■□□□□ 0.22
LIG3P49916 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.42■□□□□ 0.22
LIG3P49916 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.42■□□□□ 0.22
LIG3P49916 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 AC093724.1-201ENST00000448659 1027 ntBASIC16.42■□□□□ 0.22
LIG3P49916 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.42■□□□□ 0.22
LIG3P49916 AC015911.4-201ENST00000588022 1070 ntBASIC16.42■□□□□ 0.22
LIG3P49916 AC093512.1-201ENST00000617969 520 ntBASIC16.42■□□□□ 0.22
LIG3P49916 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.42■□□□□ 0.22
LIG3P49916 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.42■□□□□ 0.22
LIG3P49916 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 AC008677.1-201ENST00000519230 1561 ntBASIC16.42■□□□□ 0.22
LIG3P49916 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 AP3S2-216ENST00000617003 1561 ntBASIC16.42■□□□□ 0.22
LIG3P49916 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 TUBB3P1-201ENST00000405796 1332 ntBASIC16.42■□□□□ 0.22
LIG3P49916 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.42■□□□□ 0.22
LIG3P49916 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.42■□□□□ 0.22
LIG3P49916 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIG3P49916 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LIG3P49916 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 SPDYE7P-202ENST00000420373 878 ntBASIC16.41■□□□□ 0.22
LIG3P49916 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 AC098859.1-201ENST00000502915 1238 ntBASIC16.41■□□□□ 0.22
LIG3P49916 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.41■□□□□ 0.22
LIG3P49916 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.41■□□□□ 0.22
LIG3P49916 RARRES2P9-201ENST00000565168 469 ntBASIC16.41■□□□□ 0.22
LIG3P49916 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.41■□□□□ 0.22
LIG3P49916 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 MIR6080-201ENST00000617359 66 ntBASIC16.41■□□□□ 0.22
LIG3P49916 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.41■□□□□ 0.22
LIG3P49916 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.41■□□□□ 0.22
LIG3P49916 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LIG3P49916 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIG3P49916 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 AC009090.5-201ENST00000624886 2285 ntBASIC16.4■□□□□ 0.22
LIG3P49916 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
LIG3P49916 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.4■□□□□ 0.22
LIG3P49916 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms