Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CIITAP33076 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CIITAP33076 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CIITAP33076 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 HLA-K-203ENST00000430151 1046 ntBASIC17.36■□□□□ 0.37
CIITAP33076 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.36■□□□□ 0.37
CIITAP33076 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.36■□□□□ 0.37
CIITAP33076 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.36■□□□□ 0.37
CIITAP33076 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 REXO1L4P-201ENST00000605109 1937 ntBASIC17.36■□□□□ 0.37
CIITAP33076 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 AL360270.3-201ENST00000609118 1348 ntBASIC17.36■□□□□ 0.37
CIITAP33076 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 KRT8P14-201ENST00000414254 1442 ntBASIC17.36■□□□□ 0.37
CIITAP33076 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.36■□□□□ 0.37
CIITAP33076 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CIITAP33076 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.36■□□□□ 0.37
CIITAP33076 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 AC023024.2-201ENST00000623561 1993 ntBASIC17.35■□□□□ 0.37
CIITAP33076 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.35■□□□□ 0.37
CIITAP33076 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.35■□□□□ 0.37
CIITAP33076 AC112492.5-201ENST00000421897 457 ntBASIC17.35■□□□□ 0.37
CIITAP33076 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 KRT18P25-201ENST00000508931 1278 ntBASIC17.35■□□□□ 0.37
CIITAP33076 KRT17P8-201ENST00000540749 863 ntBASIC17.35■□□□□ 0.37
CIITAP33076 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.35■□□□□ 0.37
CIITAP33076 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 GNRHR2-203ENST00000581100 1187 ntBASIC17.35■□□□□ 0.37
CIITAP33076 AL022328.1-201ENST00000610050 478 ntBASIC17.35■□□□□ 0.37
CIITAP33076 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 AC018665.1-201ENST00000622927 1362 ntBASIC17.35■□□□□ 0.37
CIITAP33076 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 AC012508.2-201ENST00000567613 1472 ntBASIC17.35■□□□□ 0.37
CIITAP33076 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CIITAP33076 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms