Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 NHP2P1-201ENST00000335274 462 ntBASIC15.64■□□□□ 0.09
VCANP13611 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 AC114812.1-204ENST00000449669 728 ntBASIC15.64■□□□□ 0.09
VCANP13611 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 PHBP15-201ENST00000574228 665 ntBASIC15.64■□□□□ 0.09
VCANP13611 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 AC144522.1-201ENST00000625111 1658 ntBASIC15.64■□□□□ 0.09
VCANP13611 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 HLA-DQB1-202ENST00000399079 1501 ntBASIC15.64■□□□□ 0.09
VCANP13611 AL592424.1-201ENST00000563624 1536 ntBASIC15.64■□□□□ 0.09
VCANP13611 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
VCANP13611 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
VCANP13611 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 NME4-203ENST00000397722 1232 ntTSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 AC063952.3-201ENST00000467756 308 ntBASIC15.64■□□□□ 0.09
VCANP13611 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.64■□□□□ 0.09
VCANP13611 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VCANP13611 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 AC254633.1-201ENST00000606790 345 ntBASIC15.63■□□□□ 0.09
VCANP13611 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 AC093826.1-201ENST00000508655 993 ntBASIC15.63■□□□□ 0.09
VCANP13611 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.63■□□□□ 0.09
VCANP13611 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.63■□□□□ 0.09
VCANP13611 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
VCANP13611 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.63■□□□□ 0.09
VCANP13611 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.63■□□□□ 0.09
VCANP13611 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCANP13611 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCANP13611 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.62■□□□□ 0.09
VCANP13611 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.62■□□□□ 0.09
VCANP13611 AC008805.1-201ENST00000590892 364 ntBASIC15.62■□□□□ 0.09
VCANP13611 NAV1-210ENST00000593583 726 ntBASIC15.62■□□□□ 0.09
VCANP13611 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms