Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.17■□□□□ 0.34
TPM1P09493 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.17■□□□□ 0.34
TPM1P09493 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.17■□□□□ 0.34
TPM1P09493 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.17■□□□□ 0.34
TPM1P09493 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.17■□□□□ 0.34
TPM1P09493 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.17■□□□□ 0.34
TPM1P09493 AP002472.1-201ENST00000577490 586 ntBASIC17.17■□□□□ 0.34
TPM1P09493 CYP4F24P-201ENST00000586049 1580 ntBASIC17.17■□□□□ 0.34
TPM1P09493 AC027307.2-201ENST00000591252 911 ntBASIC17.17■□□□□ 0.34
TPM1P09493 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.17■□□□□ 0.34
TPM1P09493 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.17■□□□□ 0.34
TPM1P09493 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 AL691432.3-201ENST00000621860 400 ntBASIC17.17■□□□□ 0.34
TPM1P09493 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 AC008267.7-201ENST00000624570 1194 ntBASIC17.17■□□□□ 0.34
TPM1P09493 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
TPM1P09493 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM1P09493 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TPM1P09493 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC17.16■□□□□ 0.34
TPM1P09493 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.16■□□□□ 0.34
TPM1P09493 FAM220BP-201ENST00000377689 816 ntBASIC17.16■□□□□ 0.34
TPM1P09493 FAM8A3P-201ENST00000427218 844 ntBASIC17.16■□□□□ 0.34
TPM1P09493 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.16■□□□□ 0.34
TPM1P09493 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.16■□□□□ 0.34
TPM1P09493 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 PDPK2P-202ENST00000562415 1191 ntBASIC17.16■□□□□ 0.34
TPM1P09493 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TPM1P09493 RN7SL510P-201ENST00000581311 263 ntBASIC17.16■□□□□ 0.34
TPM1P09493 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.16■□□□□ 0.34
TPM1P09493 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
TPM1P09493 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TPM1P09493 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM1P09493 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TPM1P09493 AL137784.3-201ENST00000623858 2288 ntBASIC17.16■□□□□ 0.34
TPM1P09493 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TPM1P09493 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.15■□□□□ 0.34
TPM1P09493 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.15■□□□□ 0.34
TPM1P09493 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.15■□□□□ 0.34
TPM1P09493 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 AJ011931.1-201ENST00000618749 2492 ntBASIC17.15■□□□□ 0.34
TPM1P09493 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 FOXO1B-201ENST00000504678 1527 ntBASIC17.15■□□□□ 0.34
TPM1P09493 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms